Prepare for release v1.2.10 (#122)

Prepare for release v1.2.9 (#114)

* Prepare for release v1.2.9

* bump version for long-to-linked-pe.cpp

* Remove tigmint-make-liftover

Prepare for release v1.2.8 (#111)

Bump versions for release v1.2.7 (#108)

Prepare for release v1.2.6 (#104)

Preparing for v1.2.5 release (#71)

Co-authored-by: Puneet Sidhu <psidhu@bcgsc.ca>

Check genome size param for span=auto (#57)

* Set G=0 by default and check value in tigmint-make

* Bump up version numbers to 1.2.4

* Fix typo

* Remove and gitignore compiled long-to-linked-pe

v1.2.3 release (#55)

* Tigmint v1.2.3

* Preparing for v1.2.3 release

* azure-pipelines.yml: Update environment

* Expected outputs: update molecule BED file (ubuntu-latest sort)

Prepare for Release Version 1.2.2 (#43)

* Allow genome size to be given in scientific notation

* Update genome size parameter info

* Bump up version numbers

* Don't require genome_size argument

* Calculate dist using only read lengths > min_size

* Use 2 * cut length as lower limit for dist

* Add time commands to long-to-linked and minimap2 steps for tigmint-long

* use 1000 as lower bound for dist

* create fastq file for cut reads

* simplify get_genome_size

* create argument for dist read length percentile

* v1.2.2

* update pipeline flow chart

* change string formatting

* change expected long-to-linked outputs to fastq

* new expected output for long-to-linked

* Use p50 for dist calculation

* Update tests to use lower-bounded read length p50 as auto dist

* Don't upgrade pip installations

* Use python3.8 and add upgrade command back

* Fix python paths

* Update docstring

Co-authored-by: Lauren Coombe <lauren.e.coombe@gmail.com>

Merge pull request #41 from bcgsc/tigmint-long-bugs

Fix barcode naming bug