A light-weight and powerful meta-prompting, context engineering and spec-driven development system for Claude Code by TÂCHES.

Lightweight coding agent that runs in your terminal

Help Manage Barry's Courses

Bio3D companion package for molecular visualization

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

Course materials for "Introduction to Data Science with R", a video course by RStudio and O'Reilly Media

R code to reproduce 2nd CMI-PB Prediction challenge submission

Educational Resources for the CMI-PB Project

Building R packages

Crawl a site to generate knowledge files to create your own custom GPT from a URL

Bookup custom Quarto HTML format

GPT RStudio addins that enable GPT assisted coding, writing & analysis

Contact map alignment

MMseqs2: ultra fast and sensitive search and clustering suite

Interactive Tutorials with R Markdown

macOS Quick Look extension for Markdown files.

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

🧬 An R package for visualizing molecular data in 3D

Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

PDF Toolkit. 📎 🔨 🔧 ✂️ 📑 📁📎 🔖 🚧 👷

Checks code submissions in learnr (and potentially other) tutorials.

Linl Is Not Letter -- Markdown-based LaTeX Letter Template

A collection of training material from offered Galaxy courses

Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.