Refactored version of the drc package, a framework for fitting and analyzing dose–response models. This repository restructures the codebase to improve maintainability, transparency, and future dev…

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An open-source project that provides an user-friendly, high-performance UI for Flow Cytometry analysis.

Interactive Cytometry Data Analysis

R-based access to Mass-Spectrometry data

For demultiplexing FCB flow cytometry

Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

R package implementation of Milo for testing for differential abundance in KNN graphs

BGC Detection and Classification Using Deep Learning

Interactive visualization of assembly graphs

AdenylPred - substrate prediction tool for adenylate-forming enzymes

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)

Gene cluster comparison figure generator

Tool for deep mutational scanning experiments.

Assembly Likelihood Estimator

Contig Misassembly Correction

A tool to circularize genome assemblies

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

🧬 Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers

c++ library for representing and interacting the gated cytometry data structure

An R package implementing the UMAP dimensionality reduction method.

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

⛔ ARCHIVED ⛔

Detect doublets in single-cell RNA-seq data