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Starred repositories

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Master programming by recreating your favorite technologies from scratch.

Markdown 434,420 40,734 Updated Oct 10, 2025

Master the command line, in one page

158,682 14,749 Updated Jun 25, 2024

Coding articles to level up your development skills

JavaScript 125,701 12,363 Updated Oct 22, 2025

Papers from the computer science community to read and discuss.

Shell 99,971 6,155 Updated Oct 10, 2025

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

Jupyter Notebook 78,647 18,168 Updated Oct 24, 2025

Easy to maintain open source documentation websites.

TypeScript 62,507 9,518 Updated Oct 31, 2025

The Julia Programming Language

Julia 47,934 5,671 Updated Nov 5, 2025

Python best practices guidebook, written for humans.

Batchfile 29,322 5,901 Updated Jul 29, 2024

This repository contains implementations and illustrative code to accompany DeepMind publications

Jupyter Notebook 14,430 2,778 Updated Aug 22, 2025

Build mindmaps with plain text

TypeScript 11,985 893 Updated Jun 12, 2025

The AI developer platform. Use Weights & Biases to train and fine-tune models, and manage models from experimentation to production.

Python 10,494 785 Updated Nov 5, 2025

Uniform Manifold Approximation and Projection

Python 7,990 855 Updated Oct 26, 2025

🔬 Path to a free self-taught education in Bioinformatics!

6,480 1,055 Updated Apr 8, 2024

Official git repository for Biopython (originally converted from CVS)

Python 4,801 1,844 Updated Oct 31, 2025

A curated list of awesome Bioinformatics libraries and software.

3,723 663 Updated Mar 21, 2025

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,552 1,049 Updated Oct 23, 2025

This is the development home of the workflow management system Snakemake. For general information, see

Python 2,625 613 Updated Nov 4, 2025

R toolkit for single cell genomics

R 2,553 975 Updated Oct 29, 2025

Tools to make an R developer's life easier

R 2,481 765 Updated Oct 20, 2025

Single-cell analysis in Python. Scales to >100M cells.

Python 2,246 675 Updated Nov 4, 2025

🔽 Display any CSV (comma separated values) file as a searchable, filterable, pretty HTML table

CSS 1,730 354 Updated Mar 8, 2024

A curated list of awesome ggplot2 tutorials, packages etc.

1,708 180 Updated Nov 5, 2025

Apptainer: Application containers for Linux

Go 1,611 161 Updated Nov 5, 2025

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Jupyter Notebook 1,527 479 Updated Dec 11, 2022

Deep probabilistic analysis of single-cell and spatial omics data

Python 1,493 418 Updated Nov 4, 2025
Jupyter Notebook 1,366 290 Updated Aug 30, 2025

Additional themes, scales, and geoms for ggplot2

R 1,343 226 Updated Feb 14, 2024

Unix, R and python tools for genomics and data science

Shell 1,330 362 Updated Aug 25, 2025

Accelerated BLAST compatible local sequence aligner.

C++ 1,196 184 Updated Nov 5, 2025

🧬 gget enables efficient querying of genomic reference databases

Python 1,070 78 Updated Nov 1, 2025
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