Tags: czbiohub-sf/biahub
Tags
Add deskew overhang mean fill (#223) * Add flat field correction CLI New `biahub flat-field` command that applies flat field correction per FOV and timepoint via submitit/SLURM. Supports selecting specific channels (others copied as-is) or flat fielding all channels. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * example settings * style * test correction * style * deskew api * overhang_fill * style * example deskew config update * correct import * Fix deskew tests to use renamed deskew_zyx function The deskew function was renamed to deskew_zyx and the deskew name was reused for the API wrapper. Update tests to call deskew_zyx directly. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * Fix pre-commit: black formatting and trailing newlines Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> Co-authored-by: Talon Chandler <talonchandler@gmail.com>