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@CobiontID @Aquatic-Symbiosis-Genomics-Project @Nucleo-ERIS

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Jupyter Notebook 2 4 Updated Jul 11, 2024

:octocat: A curated awesome list of lists of interview questions. Feel free to contribute! 🎓

79,688 9,306 Updated Jul 29, 2024

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

Java 146 27 Updated Dec 19, 2025

🔮 ChatGPT Desktop Application (Mac, Windows and Linux)

Rust 54,369 6,202 Updated Aug 29, 2024

A Python library that generates static type annotations by collecting runtime types

Python 4,982 189 Updated Dec 16, 2025

A list of developer portfolios for your inspiration

Python 19,522 3,800 Updated Dec 24, 2025

The simplest, fastest repository for training/finetuning medium-sized GPTs.

Python 51,411 8,617 Updated Nov 12, 2025

Machine Learning for Neuroscience Module, Spring 2023 (https://www.imperial.ac.uk/study/courses/postgraduate-taught/translational-neuroscience/)

Jupyter Notebook 33 3 Updated Jun 2, 2023

R for data science: a book

R 4,952 4,383 Updated Nov 14, 2025

🤖 Interactive Machine Learning experiments: 🏋️models training + 🎨models demo

Jupyter Notebook 1,779 324 Updated Nov 23, 2025
HTML 19 9 Updated Feb 13, 2016

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

JavaScript 40 15 Updated Feb 28, 2024

Cleaned-up source code for the public release of L-Galaxies 2020

C 3 2 Updated Jan 18, 2024

A collection of documented examples using TreeTime

Python 22 15 Updated Jul 30, 2019
R 1 Updated Sep 25, 2019

A Framework for Coalescent Simulation in R

R 23 4 Updated Mar 20, 2024

🎄Visualization and annotation of phylogenetic trees

R 906 182 Updated Dec 19, 2025
Python 758 87 Updated May 22, 2023

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

C 257 84 Updated Dec 24, 2025

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Jupyter Notebook 28,372 7,958 Updated Jun 25, 2024

Tutorial on Bayesian phylogenetic analysis

R 51 15 Updated Sep 21, 2017

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

C 1,538 330 Updated Dec 24, 2025

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Perl 556 117 Updated Dec 12, 2025

TraceTuner, the DNA sequencing quality value, base calling and trace processing software.

C 9 6 Updated Jan 15, 2015

A fork of exonerate: a generic tool for sequence alignment

C 71 27 Updated Nov 30, 2023

A Python package for testing evolutionary hypotheses in genome-wide approaches.

Python 32 11 Updated Mar 5, 2021

Phylogenetic orthology inference for comparative genomics

Python 821 201 Updated Jul 15, 2025

Applied Computational Genomics Course at UU: Spring 2020

HTML 1,072 238 Updated Apr 5, 2024

Various scripts for various purposes

Perl 10 3 Updated Mar 4, 2025
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