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1. Commits on Jun 2, 2023

   • Use numeric_limits to obtain max query/ref length

     lrvdijk

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   • Use numeric_limits to obtain max sequence length

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2. Commits on Jun 1, 2023

   • Allow for longer query/ref sequences

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   • Remove old scipy version constraint

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3. Commits on Aug 17, 2022

   • Free viterbi/pointer matrices each iteration

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   • Add extra features to tesserae multi-align

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4. Commits on Aug 11, 2022

   • Change default rho

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     lrvdijk

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   • Update tests

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5. Commits on Aug 10, 2022

   • Add num SNPs as a tag in SAM output

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6. Commits on Aug 9, 2022

   • Add google-cloud-sdk to docker environment

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7. Commits on Aug 1, 2022

   • Only run docker image creation on latest version

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   • Merge branch 'lvd_cythonized'

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   • Add docker image building workflow

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8. Commits on Jul 8, 2022

   • Merge pull request #35 from castcollab/lvd_cythonized

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     lrvdijk

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9. Commits on May 20, 2022

   • Add tesserae multi-align command

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10. Commits on May 3, 2022

    • Fix versions

      lrvdijk

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    • Remove print statement

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    • Set version to 2.0alpha

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11. Commits on Apr 27, 2022

    • Add ability to configure HMM

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12. Commits on Apr 26, 2022

    • Update README

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    • Fix tests

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    • Add `view` CLI for pretty print of alignment

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13. Commits on Apr 25, 2022

    • Enable future annotations

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    • Fix tests

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    • Attempt to fix test

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    • Install Cython for tests

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    • Add build system requirements

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    • Add Cython to test requirements

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    • Fix python versions in actions

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    • Replace code with new Cython version

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14. Commits on Apr 24, 2020

    • Adds mypy testing and type hints for sequence.py (#32)

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      Winni Kretzschmar

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15. Commits on Apr 21, 2020

    • Remove untested and superfluous entry point

      

      Warren Kretzschmar

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    • Revert "Revert "More refactorin and consolidatin in model.py""

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      Warren Kretzschmar

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    • Revert "Revert "Refactor out model parameters into separate class""

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      Warren Kretzschmar

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    • Add dataclasses for reverse compatibility with py36

      

      Warren Kretzschmar

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