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Commits on Oct 30, 2025

• Merge branch 'main' of github.com:cgroza/GraffiTE

  cgroza

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• Handle edge case in parsing

  cgroza

  committed
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Commits on Oct 29, 2025

• Add Star History section to README

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  clemgoub

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Commits on Oct 1, 2025

• Update README.md

  clemgoub

  authored
  2a5d1f4

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• Update repmask_vcf.sh

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  clemgoub

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Commits on Jun 11, 2025

• Merge branch 'main' of github.com:cgroza/GraffiTE

  cgroza

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• Define bams default value

  cgroza

  committed
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Commits on May 19, 2025

• Update README.md

  clemgoub

  authored
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Commits on May 15, 2025

• Update README.md with pre-formatted libs

  clemgoub

  authored
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Commits on May 12, 2025

• Default value for repeat_masker_memory.

  cgroza

  committed
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Commits on Mar 26, 2025

• Remove header with bcftools view not grep

  cgroza

  committed
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• Extra "

  cgroza

  committed
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• Replace bedtools getfasta with samtools faidx

  cgroza

  committed
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Commits on Mar 25, 2025

• Use repeat masker time parameter for splitting VCF too

  cgroza

  committed
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• Replace uses of grep with bcftools view -h/-H

  cgroza

  committed
  f2bf8f5

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• Use -H flag to remove header instead of grep

  cgroza

  committed
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Commits on Mar 24, 2025

• Increase maximum memory allowed by bcftools

  cgroza

  committed
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Commits on Mar 17, 2025

• Merge pull request #63 from cgroza/giraffe-lr

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Commits on Mar 4, 2025

• Sort parameter names

  cgroza

  committed
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Commits on Feb 25, 2025

• vg autoindex doesn't like compressed VCF

  cgroza

  committed
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Commits on Feb 20, 2025

• Default resources for make_graph

  cgroza

  committed
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• Add time parameter for vg call

  cgroza

  committed
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Commits on Feb 17, 2025

• Update README and templates

  cgroza

  committed
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Commits on Feb 15, 2025

• No interleaved flag for longreads

  cgroza

  committed
  47a0e24

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• New inputs for newest vg giraffe

  cgroza

  committed
  eb4b5b0

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• Fix syntax.

  cgroza

  committed
  b141a0a

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• Add support for Giraffe presets

  cgroza

  committed
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• pre-stash index

  cgroza

  committed
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Commits on Feb 5, 2025

• Merge pull request #54 from cgroza/repmask

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  cgroza

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Commits on Jan 29, 2025

• Example code on how to repeat mask a GFA subgraph

  cgroza

  committed
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• Publish genome graph from make_graph

  cgroza

  committed
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Commits on Jan 28, 2025

• Fix bug with giraffe

  cgroza

  committed
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Commits on Jan 26, 2025

• Updated README.

  cgroza

  committed
  ad9b5ea

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• Correctly associate VCF with repeatmasker_dir

  cgroza

  committed
  c0df88f

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• Fix resume from repeat masker runs

  cgroza

  committed
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