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Error at tsd_search

Status: Open.

#82 In cgroza/GraffiTE;

· aurelpetit opened on Nov 7, 2025

Remove <code>onecode</code> and use native RMasker hit_id to count fragments

enhancementNew feature or requestNew feature or request

Status: Open.

#81 In cgroza/GraffiTE;

· clemgoub opened on Oct 30, 2025

GraffiTE running on some assemblies but not others

Status: Open.

#80 In cgroza/GraffiTE;

· erg237 opened on Oct 16, 2025

Create a <code>--min_sv</code> length option (current is 100bp).

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In cgroza/GraffiTE;

· clemgoub opened on Aug 18, 2025

RepeatMasking is missing/incomplete

Status: Open.

#77 In cgroza/GraffiTE;

· hakwlla opened on Aug 5, 2025

GraphAligner issue

Status: Open.

#76 In cgroza/GraffiTE;

· Chloegrbs opened on Jul 31, 2025

tsd_search not running in docker configuration

Status: Open.

#75 In cgroza/GraffiTE;

· steflinux opened on Jul 15, 2025

Error in creating directory at split_repeatmask

Status: Open.

#69 In cgroza/GraffiTE;

· ValentinaPeona opened on Jun 12, 2025

Suggestion: transduction detection

enhancementNew feature or requestNew feature or request

Status: Open.

#65 In cgroza/GraffiTE;

· Will-Tyler opened on Apr 15, 2025

Suggestion: Retain the phasing info from the input VCF

enhancementNew feature or requestNew feature or request

Status: Open.

#58 In cgroza/GraffiTE;

· RisaWatanabe opened on Feb 19, 2025

Suggestion: support genotyping from BAMs

enhancementNew feature or requestNew feature or request

Status: Open.

#57 In cgroza/GraffiTE;

· Will-Tyler opened on Feb 13, 2025

vcf_annotation.gz file cannot be proceed

Status: Open.

#51 In cgroza/GraffiTE;

· xuefenfei712 opened on Jan 11, 2025