Starred repositories
OligoGym is a python package that streamlines processes involving featurization, training and evaluation of predictive models of oligonucleotide properties. Oligonucleotides include antisense oligo…
The GEP-powered self-evolving engine for AI agents. Auditable evolution with Genes, Capsules, and Events. | evomap.ai
197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon.
The agent that grows with you
OpenSeeker: A search agent with open-source data and models
PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development
SkillRL: Evolving Agents via Recursive Skill-Augmented Reinforcement Learning
A Tool to Annotate and Prioritize Exome Variants
The paper list of "Memory in the Age of AI Agents: A Survey"
A comprehensive collection of Agent Skills for context engineering, multi-agent architectures, and production agent systems. Use when building, optimizing, or debugging agent systems that require e…
A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.
Agentic System, Tool Use, Electronic Health Record, Large Language Models, Clinical Nature Language Processing
📑 PageIndex: Document Index for Vectorless, Reasoning-based RAG
MCP Toolbox for Databases is an open source MCP server for databases.
Democratizing AI scientists with ToolUniverse
A curated list of awesome Claude Skills, resources, and tools for customizing Claude AI workflows
Holistic Evaluation of Language Models (HELM) is an open source Python framework created by the Center for Research on Foundation Models (CRFM) at Stanford for holistic, reproducible and transparen…
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…
Wang, Z., Cao, L., Danek, B. et al. Accelerating clinical evidence synthesis with large language models. npj Digit. Med. 8, 509 (2025). https://doi.org/10.1038/s41746-025-01840-7
RankLLM is a Python toolkit for reproducible information retrieval research using rerankers, with a focus on listwise reranking.
Text-to-SQL Generation for Question Answering on Electronic Medical Records
[EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records
Memori is agent-native memory infrastructure. A LLM-agnostic layer that turns agent execution and conversation into structured, persistent state for production systems.