Lists (7)
Stars
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
including unet,unet++,attention-unet,r2unet,cenet,segnet ,fcn.
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
Transformer based on a variant of attention that is linear complexity in respect to sequence length
Generation of protein sequences and evolutionary alignments via discrete diffusion models
[NeurIPS 2024] Simple and Effective Masked Diffusion Language Model
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
ACL'2023: DiffusionBERT: Improving Generative Masked Language Models with Diffusion Models
The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
The Family of Diffusion Protein Language Models (DPLM)
A generative latent variable model for biological sequence families.
Efficient evolution from protein language models
Auto get diffusion nlp papers in Axriv. More papers Information can be found in another repository "Diffusion-LM-Papers".
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
RNA-seq prediction with deep convolutional neural networks.
LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
PlantCAD: cross-species modeling of plant genomes