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VFGF Public
Forked from MCLXD/VFGFVFGF: Virtual Frame-Augmented Guided Prediction Framework for Long-Term Egocentric Activity Forecasting
Python UpdatedJul 21, 2025 -
FDHP Public
Forked from MCLXD/FDHPA Hybrid Recurrent Framework Based on Embedded Driving Features for Egocentric Activity Forecasting
UpdatedJul 10, 2025 -
HiCENT Public
Forked from shaoqiangzhang/HiCENTEnhancing sngle-cell and bulk Hi-C data by generative Transformer model
Python GNU General Public License v3.0 UpdatedFeb 22, 2025 -
scHIC_Evaluation Public
This is a repository for the code scripts of analyzing the data quality across all available scHi-C protocols.
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scTIGER Public
The Single-cell Temporal Inference of Gene Regulatory (scTIGER) Networks method is a computational method designed to predict gene regulatory networks (GRNs) using paired datasets of case versus co…
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GRANGER Public
Forked from shaoqiangzhang/GRANGERGranger recurrent autoencoders to network gene expression regulations
Python GNU General Public License v3.0 UpdatedOct 28, 2024 -
DOTNB Public
The DOTNB repository is a collection of code files that implement DOTNB across several programming languages. The DOTNB is the distribution for the Difference Of Two Negative Binomial distributions…
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DEGage Public
DEGage is a novel model-based method for gene differential expression analysis between two groups of scRNA-seq count data. It employs a novel family of discrete distributions for describing the dif…
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Onboarding Public
This is the onboarding material for new students or students rotating in the Chen Lab in the Department of Biological and Biomedical Sciences at Rowan University.
MIT License UpdatedSep 28, 2024 -
scTIGER2.0 Public
We are updating scTIGER for inferring GRN from single dataset and case-vs-control dataset.
Python UpdatedJul 23, 2024 -
DeepIMAGER Public
Forked from shaoqiangzhang/DeepIMAGERa deep learning model for predicting gene regulatory networks from scRNA-seq and ChIP-seq
Python GNU General Public License v3.0 UpdatedMay 9, 2024 -
DeepBID Public
Forked from shaoqiangzhang/DeepBIDDeep Batch Integration and Denoise of Single-Cell RNA-seq Data
Python GNU General Public License v3.0 UpdatedNov 13, 2023 -
DeepScena Public
Forked from shaoqiangzhang/DeepScenaDeep clustering of scRNA-seq data
Python GNU General Public License v3.0 UpdatedOct 13, 2023 -
Data-Structures-using-Python Public
Forked from OmkarPathak/Data-Structures-using-PythonThis is my repository for Data Structures using Python
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 8, 2023 -
ENCODE_rna-seq-pipeline Public
Forked from ENCODE-DCC/rna-seq-pipelinePython MIT License UpdatedNov 3, 2022 -
DEGman Public
Forked from shaoqiangzhang/DEGmanDEGman is a R package for detecting differentially-expressed genes for scRNAseq data
R GNU General Public License v3.0 UpdatedApr 23, 2022 -
SCENA Public
Forked from shaoqiangzhang/SCENAConsensus Clustering of Single-cell RNA-seq Data by Enhancing Network Affinity
R MIT License UpdatedJan 6, 2022 -
GATEkeeper Public
GATEkeeper is an effective pipeline to detect and annotate mutations. Based on large number of sequenced COVID-19 genomes, GATkepper pipeline provides a useful tool for deep analysis of virus mutat…
C MIT License UpdatedOct 13, 2021 -
C3S Public
Forked from YONGCHENUTD/C3Smodel-based analysis and pipeline of dCas9 Capture-3C-Seq data
Python GNU General Public License v3.0 UpdatedJun 15, 2020 -
fishermp Public
Forked from shaoqiangzhang/fishermpFisherMP: Motif Prediction using Fisher's exact test with openMP Parallel design
C++ GNU General Public License v3.0 UpdatedDec 10, 2018 -
climp Public
Forked from shaoqiangzhang/climpCLIMP is an parallel computing algorithm for data clustering with openMP design.
C++ UpdatedJan 13, 2018
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