A tool to help improve data quality standards in observational data science.

Research with the National Clinical Cohort Collaborative (N3C)

Ingest of GOCAM suitable for inclusion in KG

Cookiecutter for making MCPs that we can plug into LLMs, agents, etc

LLM retrieval augmented generation agent for the Monarch Knowledge graph.

My implementation of a kubernetes cluster using Raspberry Pi 3, Zero and ClusterHAT

A simple registry for KGHub projects

A friendly language for mappings to RDF

Repo for the ontology-based rare disease common data model harmonising international registries, FHIR, and Phenopackets

Conversion from FHIR HL7 to OMOP CDM

Alpha tests on monoid-annotated fingertrees in R.

an operating system for the Raspberry Pi Pico

Mirror of JONESFORTH

A tiny Forth I built in a week. Blog post: https://www.thanassis.space/miniforth.html

Mapping between LinkML schemas

A knowledge base for short snippets

This project provides the source for the SQL on FHIR v2.0 Implementation Guide

A FHIR implementation guide that supports conversion of data from FHIR to OMOP and OMOP to FHIR

An experimental Clinical Quality Language execution engine for analyzing FHIR healthcare data at scale.

Phenopackets to FHIR converter library https://phenopackets-to-fhir-converter.readthedocs.io/en/latest/

C-CDA to and from US Core

A fast, purely functional data structure library in Common Lisp.

Educational material for the N3C short course, January 2024. (All assignments are contained in the secure Enclave.)

Georgia Tech FHIR Server Web Page

CCDA on FHIR implementation Guide Source