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@clinical-data-mining

clinical-data-mining

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  1. msk-chord-figures-public msk-chord-figures-public Public

    Code and sample data for the MSK-CHORD manuscript (public version)

    Jupyter Notebook 8 2

  2. organ-site-mapping organ-site-mapping Public

    Mapping ICD billing codes and terms to a standard ontology

    Jupyter Notebook 6 3

  3. ctDNA_CAT ctDNA_CAT Public

    Data and code for liquid biopsy/cancer associated thromboembolism project

    Jupyter Notebook 2

  4. pathology_report_segmentation pathology_report_segmentation Public

    Python 1 1

  5. msk_cdm msk_cdm Public

    Prototype for new CDM repo layout

    Python 1 2

  6. onc_IR_LLM onc_IR_LLM Public

    code for combining information retrieval (i.e. ColBERT) and LLMs for annotating oncologic EHR datasets

    Jupyter Notebook 1 1

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