Standardized benchmark for computational pathology foundation models.

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

Devel repository for minfi

Visualizing Differential Expression of Paralogs in KEGG Gene Pathways

An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

'ggplot2' Based Publication Ready Plots

Nextflow workflow for analyzing CRISPR screen NGS data

Analyze CRISPR and shRNA functional genetic screening data

A curated list of nextflow based pipelines

High-resolution genetic mapping for pooled sequencing.

Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

SortMeRNA: next-generation sequence filtering and alignment tool

🎄Visualization and annotation of phylogenetic trees

📊 A universal enrichment tool for interpreting omics data