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Pull requests: cognoma/cancer-data

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Pull requests list

Add cancer-type codes to mapping
#48 by gwaybio was merged Apr 19, 2018 Loading…
5
Add recurrent solid & metastatic samples
#47 by dhimmel was merged Apr 16, 2018 Loading…
9
Move diseases.tsv to data
#45 by dhimmel was closed Apr 13, 2018 Loading…
1
Retain zero-mutation samples
#44 by dhimmel was merged Apr 16, 2018 Loading…
9
Modernize repo: readme updates & LFS
#42 by dhimmel was merged Apr 9, 2018 Loading…
3
Update Data for April 2018 TCGA PanCanAtlas Data Release
#41 by gwaybio was merged Apr 8, 2018 Loading…
1
3
Melt mutation matrix for use by core-service repository.
#35 by stephenshank was closed Dec 5, 2016 Loading…
1
Dual license repository as BSD & CC0
#33 by dhimmel was merged Nov 1, 2016 Loading…
@cgreene
2
Outsource Entrez Gene logic to cognoma/genes
#32 by dhimmel was merged Oct 10, 2016 Loading…
7
Extract gene information
#30 by dhimmel was closed Oct 10, 2016 Loading…
2
Export complete data
#28 by dhimmel was merged Oct 5, 2016 Loading…
@gwaybio
5
Add disease acronyms and update covariates.tsv
#27 by dhimmel was merged Sep 29, 2016 Loading…
12
Create sample-by-pathway dataset
#25 by stephenshank was closed Oct 10, 2019 Loading…
8
Encodes categorical covariates from samples dataset.
#24 by stephenshank was merged Sep 17, 2016 Loading…
1
Add exploratory analyses of mutation data
#22 by dhimmel was merged Sep 7, 2016 Loading…
9
Extract sample info from PANCAN_clinicalMatrix
#20 by dhimmel was merged Aug 25, 2016 Loading…
@clairemcleod
13
Add figshare link to README
#19 by dhimmel was merged Aug 23, 2016 Loading…
1
Sanitize notebook cell numbers, update HiSeqV2
#18 by dhimmel was merged Aug 23, 2016 Loading…
2
Map mutation gene symbols to Entrez IDs
#12 by clairemcleod was merged Aug 10, 2016 Loading…
27
Map HiSeqV2 symbols to entrez gene IDs
#8 by dhimmel was merged Jul 26, 2016 Loading…
4
Process data into expression and mutation matrices
#7 by dhimmel was merged Jul 22, 2016 Loading…
13
Create a data/notebook repository framework and download TCGA data
#1 by dhimmel was closed Jul 19, 2016 Loading…
1
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