🧬 Bioinformatics | 🏔️ Genomics | ⚡ Nextflow Expert | 🧪 QTL Analysis
- 🧬 Bioinformatics researcher passionate about NGS analyses, non-model genomics, and medical genomics
- Currently working on eQTL mapping and colocalization in human disease cohorts
- Specializing in QTL analyses, variant calling, and RNA-seq workflows
- Deepening expertise in Nextflow pipeline development and biostatistics
- Open to collaborations on genomics projects, especially QTL and GWAS studies
- Fun fact: I love mountain biking and am training for a half marathon!
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Scalable Nextflow pipeline for disease eQTL mapping - Prioritize disease-relevant expression QTLs in human heart failure with automated workflow for RNA-seq and genotype data. |
GTEx tissue expression overlap - Analyze expression patterns across human tissues using GTEx database for comparative genomics studies. |
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Balancing selection in Daphnia - Explored trans-specific polymorphisms to uncover long-term balancing selection in cryptic species. |
Comparative gene family analysis - Automated pipeline for detecting and analyzing evolving gene families across multiple Daphnia lineages. |
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HiFi genome assembly for D. obtusa - Complete Nextflow pipeline for PacBio HiFi de novo assembly with quality assessment and visualization. |
Interactive genome browser - Web-based tool for exploring and visualizing genomic data with interactive features. |
View More Projects
- 🧮 rsID API Ensembl - Extract rsIDs from chromosome and position information using Ensembl API
- 🪰 Drosophila Bottleneck Simulations - Simulate overwintering bottlenecks in wild fly populations
- 🦞 Barnacle Genetics - Evolutionary history from NGS draft genome with demographic analysis
- 🧬 CNV Analysis - Quantify structural variants in clonal Daphnia genomes
- 📊 GEVA Daphnia - Estimate age of single-nucleotide polymorphisms from whole genomes
- 🏢 Graduate Student Wages - Analysis of graduate stipends and cost of living across US universities
- 🔬 Methyl Farnesoate & Reproduction - Effects of hormones on male production in Daphnia clones
- 🧬 Drosophila Genomics - Inversion status and de novo assembly of Drosophila melanogaster
- 🌍 Daphnia Phylogeography - Worldwide phylogeography project for Daphnia species
I'm always interested in discussing genomics research, bioinformatics tools, and collaborative opportunities!
Feel free to explore my repositories and reach out if you have any questions or ideas for collaboration.