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ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Jupyter Notebook 1,296 167 Updated May 22, 2025

A pipeline on WES(whole exome sequence) analysis, from data download to analysis

Shell 9 1 Updated Mar 25, 2024

Conda recipes for the bioconda channel.

Shell 1,795 3,829 Updated Apr 4, 2026

A pipeline on RNAseq analysis, from data download to analysis

Perl 5 1 Updated Jun 26, 2024

Calculate CUB indices and optimize the gene sequence to enhance expression

Roff 3 Updated Jan 12, 2025

Some explorations about codon usage bias.

R 5 1 Updated Sep 12, 2023

Python scripts for correlation analysis of ChIP-seq samples

Python 3 1 Updated Feb 20, 2021