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danich1.github.io Public
Personal webiste for David Nicholson
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plydata Public
Forked from has2k1/plydataA grammar for data manipulation in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 19, 2023 -
word_lapse_manuscript Public
Forked from greenelab/word_lapse_manuscriptThis manuscript will be focused on the work done in [greenelab/biovectors](https://github.com/greenelab/biovectors).
HTML UpdatedApr 11, 2023 -
biovectors Public
Forked from greenelab/biovectorsDetecting Biomedical Relationships using Word2vec On Pubtator Central
Jupyter Notebook Other UpdatedMar 9, 2023 -
fuzzy-c-means Public
Forked from omadson/fuzzy-c-meansA simple python implementation of Fuzzy C-means algorithm.
Python MIT License UpdatedDec 2, 2022 -
text_mined_hetnet_manuscript Public
Forked from greenelab/text_mined_hetnet_manuscriptThis manscript is on using snorkel to extract Heterogeneous Relationships from Pubmed Abstracts.
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word-lapse Public
Forked from greenelab/word-lapseWORK IN PROGRESS - Explore how a word changes in meaning over time
JavaScript Other UpdatedJun 3, 2022 -
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snorkeling-full-text Public
Forked from greenelab/snorkeling-full-textThis is an upgraded version of the original snorkeling project
Jupyter Notebook Other UpdatedApr 27, 2022 -
cook-import Public
Forked from cooklang/cooklang-importA command line tool to import recipes into Cooklang format
Python MIT License UpdatedApr 18, 2022 -
greenelab.com Public
Forked from greenelab/greenelab.comThe website source code for greenelab.com
SCSS BSD 3-Clause "New" or "Revised" License UpdatedNov 30, 2021 -
bayesian_changepoint_detection Public
Forked from hildensia/bayesian_changepoint_detectionMethods to get the probability of a changepoint in a time series.
Jupyter Notebook MIT License UpdatedNov 26, 2021 -
annorxiver_manuscript Public
Forked from greenelab/annorxiver_manuscriptThis manuscript covers the annorxiver project.
HTML Other UpdatedNov 25, 2021 -
preprint-similarity-search Public
Forked from greenelab/preprint-similarity-searchJournal recommendation dash app for the annorxiver project
Python Other UpdatedNov 19, 2021 -
annorxiver Public
Forked from greenelab/annorxiverAnnotating bioRxiv preprints in an automated fashion
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 25, 2021 -
onboarding Public
Forked from greenelab/onboardingOnboarding materials for the Greene Lab
Creative Commons Zero v1.0 Universal UpdatedFeb 16, 2021 -
connectivity-search-manuscript Public
Forked from greenelab/connectivity-search-manuscriptManuscript describing Hetnet Connectivity Search
HTML Other UpdatedJan 15, 2021 -
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pubtator Public
Forked from greenelab/pubtatorRetrieve and process PubTator annotations
Python Other UpdatedOct 15, 2020 -
pdfminer.six Public
Forked from pdfminer/pdfminer.sixCommunity maintained fork of pdfminer
Python MIT License UpdatedSep 10, 2020 -
surpriver Public
Forked from tradytics/surpriverFind big moving stocks before they move using machine learning and anomaly detection
Python GNU General Public License v3.0 UpdatedSep 2, 2020 -
covid19-review Public
Forked from greenelab/covid19-reviewA collaborative review of the emerging COVID-19 literature. Join the chat here:
HTML Other UpdatedMay 13, 2020 -
knowledge-graph-review Public
Forked from greenelab/knowledge-graph-reviewA literature review for constructing and using knowledge graphs in a biomedical setting.
HTML Other UpdatedMay 7, 2020 -
snorkeling Public
Forked from greenelab/snorkelingExtracting when a compound treats a disease from the literature with Snorkel
Jupyter Notebook Other UpdatedMar 12, 2020 -
catalog Public
Forked from manubot/catalogCatalog of made with Manubot manuscripts
Python Creative Commons Zero v1.0 Universal UpdatedAug 7, 2019 -
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Spider-Pipeline Public
This is the meme-mast pipeline runner for identifying conserved motifs and cassettes in proteomic data.
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metal Public
Forked from HazyResearch/metalSnorkel MeTaL: A framework for training models with multi-task weak supervision
Python Apache License 2.0 UpdatedMar 4, 2019 -
snorkel Public
Forked from snorkel-team/snorkelA training data creation and management system focused on information extraction
Jupyter Notebook Apache License 2.0 UpdatedOct 11, 2018 -
numbskull Public
Forked from HazyResearch/numbskullNumba-based version of DimmWitted Gibbs sampler
Python UpdatedMay 14, 2018
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