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  1. denovopipeline denovopipeline Public

    Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.

    Python 44 10

  2. ZKI-PH-ImageAnalysis/seq2squiggle ZKI-PH-ImageAnalysis/seq2squiggle Public

    End-to-end simulation of nanopore sequencing signals with feed-forward transformers

    Python 16 1

  3. BacterialGenomeAnalysis BacterialGenomeAnalysis Public

    Automated pipeline for whole bacterial genome analysis based on snakemake

    Python 12 3

  4. rki-mf1/breakfast rki-mf1/breakfast Public

    breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).

    Python 11 1