MNT bump to 4.0.1

MNT bump to 4.0.0

MNT bump to 3.0.4

MNT patch 3.0.3

MNT patch 3.0.2

FIX Stan models compilation, FIX channel priority

MNT bump to v3.0.0

version 2.0.0

Bump version to 1.1.12

MNT merge with dev for version 1.1.11

Squashed commit of the following:

commit ca5f27f
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Fri Dec 8 18:36:36 2017 +0100

    MNT bump to verion 1.1.11

commit 6de84d3
Merge: 6573e7a eee7cdc
Author: Etienne Boileau <boileau@uni-heidelberg.de>
Date:   Fri Dec 8 18:30:58 2017 +0100

    Merge branch 'master' into dev

commit eee7cdc
Author: Etienne Boileau <boileau@uni-heidelberg.de>
Date:   Fri Dec 8 18:28:34 2017 +0100

    latest changes

commit 6573e7a
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Fri Oct 27 00:48:30 2017 +0200

    UPD change log with date for version 1.1.10

commit 8d7f148
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Thu Oct 26 23:06:10 2017 +0200

    MNT specify prereq versions

commit da8f7e2
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Thu Oct 26 22:59:57 2017 +0200

    DEL cluster-subcodon-counts

    This addresses Issue #78

commit 803a709
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Thu Jun 22 22:06:29 2017 +0200

    ADD basic notebook for creating ORF type count table

    This starts to address Issue #70

commit 9ae476f
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Thu Jun 22 22:05:33 2017 +0200

    ADD skeleton for automated testing

    This is a first step for Issue #76

commit 06bdcad
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Sat Jun 17 18:04:15 2017 +0200

    UPD dependencies to point to new utils repos

    This addresses Issue #74

commit 067735e
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Sat Jun 17 17:29:08 2017 +0200

    UPD CL for prereq script link

commit 75c3156
Author: Brandon Malone <bmmalone@gmail.com>
Date:   Sat Jun 17 17:18:22 2017 +0200

    ADD reference to gist to install prereqs

    This addresses Issue #75