Stars
a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
Module identification for subcellular spatial transcriptomics.
A probabilistic factor model for spatial transcriptomics data with subcellular resolution
Central repository for biomolecular foundation models with shared trainers and pipeline components
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
A Nextflow pipeline for protein binder design
ImmunoMatch for predicting cognate pairing between immunoglobulin heavy and light chains
Quantum Gene Regulatory Networks with Application to Single-cell Data
Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted binding specificity to an input antigen prompt sequence
Analysis of axolotl pallium gene expression data in the context of evolution and neurogenesis
Get up and running with OpenAI gpt-oss, DeepSeek-R1, Gemma 3 and other models.
An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.
Probabilistic cell segmentation for in situ spatial transcriptomics
The R package of 'Scalable Two-level Spatial Clustering for Integrative Analysis of Multi-sample SRT Data'
A fully open source biomolecular structure prediction model based on AlphaFold3
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg interfaces, and AbEpiTarget-1.0, optimised for selecting the ant…