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A short and to-the-point summary of a reproducible data science workflow

HTML 58 9 Updated Mar 7, 2019

📙 Amazon Web Services — a practical guide

Shell 36,415 3,903 Updated Aug 16, 2024

"What They Forgot to Teach You About R" website / eBook

R 435 82 Updated May 20, 2026

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

R 230 43 Updated Jan 14, 2026

Quickly copy in changes to a file and push code to a git repository used for teaching

Python 79 8 Updated Oct 25, 2021

Website of our Carpentries-based workshop from July 2018 (former contact: @katrinleinweber)

Python 10 5 Updated May 12, 2020

Fully customizable (scientific, compute-intensive) web application template

Python 31 20 Updated May 18, 2026
R 2 3 Updated Dec 7, 2017

Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach

Python 36 4 Updated Dec 20, 2010

Materials for UC Berkeley Neuroscience 299

Jupyter Notebook 53 18 Updated Jan 3, 2020

Graph and network visualization using tabular data in R

R 1,736 248 Updated Apr 27, 2026

A template for a fully-functioning sphinx deployment

Python 5 10 Updated Mar 8, 2017

A command-line murder mystery

6,141 1,297 Updated Sep 21, 2023

Github Pages for events, forked from mmistakes/minimal-mistakes

CSS 9 12 Updated Sep 22, 2020

A Jekyll template (based on holman/left) for a group that has regularly scheduled meetings, one post per date. Genericized from thehackerwithin/template

CSS 21 24 Updated Sep 27, 2016

The Hacker Within at the University of California - Berkeley

Jupyter Notebook 102 95 Updated May 1, 2023

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

80 21 Updated Nov 7, 2016

R package of techniques for comparing clusterings of single-cell sequencing data

R 41 14 Updated Apr 13, 2026

A starting point for discovering the wonderful world of Git, GitHub, and Git Annex (Assistant)

Shell 77 97 Updated Oct 24, 2019