Repository to host shared code for the lab

This repository has the description of the hg38 genome categorization of easy, difficult, and extreme region.

This repository contains codes and resources for the SMaHT SNV benchmarking paper ().

BSMN common data processing pipeline

This is the development home of the workflow management system Snakemake. For general information, see

Salamander is a non-negative matrix factorization framework for signature analysis

main repository for SMaHT pipelines

Interactive multiscale visualization for structural variation in human genomes

pipeline modules contributed to cgap through external collaboration

A small library with some useful object to analyze DNA sequences

A collection of software to work with genomic variants

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.