trainingsdata
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trainingsdata
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All files a tab separated files. All indels are Sanger validated. If the class label is 1 the indel is confirmed, whereas if the class label is -1 the indel is rejected (negative example). For more detailed information of the features see attached Table and Tab-Nr.. File formats: Training data: ------------- Validated deletion candidates containing the single feature f1 (deletions_f1.tab): 1. class label 2. chromosome 3. deletion start 4. deletion end 5. deletion length (Tab-Nr. 16) Validated insertion candidates containing the single feature f1 (insertions_f1.tab): 1. class label 2. chromosome 3. insertion start 4. insertion end 5. insertion length (Tab-Nr. 16)> Validated insertion candidates containing 13 features f13 (insertions_f13.tab): 1. class label 2. chromosome 3. insertion start 4. insertion end 5. UMR upstream (Tab-Nr. 5) 6. UMR downstream (Tab-Nr. 9) 7. error-free UMR upstream (Tab-Nr. 6) 8. error-free UMR downstream (Tab-Nr. 10) 9. N-UMR upstream (Tab-Nr. 7) 10. N-UMR downstream (Tab-Nr. 11) 11. error-free N-UMR upstream (Tab-Nr. 8) 12. error-free N-UMR downstream (Tab-Nr. 12) 13. SPV (Tab-Nr. 13) 14. SPV (Tab-Nr. 14) 15. SPV (Tab-Nr. 15) 16. insertion support (Tab-Nr. 17) 17. insertion length (Tab-Nr. 16)> Validated deletion candidates containing 17 features f17 (insertions_f17.tab): 1. class label 2. chromosome 3. insertion start 4. insertion end 5. UMRs within deletion (Tab-Nr. 1) 6. error-free UMRs within deletion (Tab-Nr. 2) 7. N-UMRs within deletion (Tab-Nr. 3) 8. error-free N-UMRs within deletion (Tab-Nr. 4) 9. UMR upstream (Tab-Nr. 5) 10. UMR downstream (Tab-Nr. 9) 11. error-free UMR upstream (Tab-Nr. 6) 12. error-free UMR downstream (Tab-Nr. 10) 13. N-UMR upstream (Tab-Nr. 7) 14. N-UMR downstream (Tab-Nr. 11) 15. error-free N-UMR upstream (Tab-Nr. 8) 16. error-free N-UMR downstream (Tab-Nr. 12) 17. SPV (Tab-Nr. 13) 18. SPV (Tab-Nr. 14) 19. SPV (Tab-Nr. 15) 20. deletion support (Tab-Nr. 17) 21. deletion length (Tab-Nr. 16)>