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Investigate feasibility of adding refineGEMs to conda

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

questionFurther information is requestedFurther information is requested

Status: Open.

Task

#185 In draeger-lab/refinegems;

· GwennyGit opened on Oct 24, 2025

·  

New functions towards future versions

Recheck licenses

databaseIssue concerning the databaseIssue concerning the database

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#183 In draeger-lab/refinegems;

· GwennyGit opened on Aug 26, 2025

[FEATURE] Enhance <code>core_pan</code> module

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#179 In draeger-lab/refinegems;

· cb-Hades opened on Mar 20, 2025

[FEATURE] Enhance the <code>report</code> class

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#174 In draeger-lab/refinegems;

· GwennyGit opened on Mar 14, 2025

Rework example inputs

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

refactoringchanges in the code functionalitychanges in the code functionality

Status: Open.

Task

#165 In draeger-lab/refinegems;

· GwennyGit opened on Mar 13, 2025

[FEATURE] Extend documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#162 In draeger-lab/refinegems;

· GwennyGit opened on Mar 4, 2025

Better handling of NCBI requests

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#159 In draeger-lab/refinegems;

· GwennyGit opened on Feb 26, 2025

More options and enhancements for gap-filling

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#156 In draeger-lab/refinegems;

· cb-Hades opened on Feb 25, 2025

Implement a consistent logging for refinegems

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#155 In draeger-lab/refinegems;

· cb-Hades opened on Feb 24, 2025

Transfer media database to BioDatA-Server

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#154 In draeger-lab/refinegems;

· GwennyGit opened on Feb 24, 2025

Growth Curves: Data to gap-filling input

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

Feature

#127 In draeger-lab/refinegems;

· cb-Hades opened on Jul 17, 2024

Track infeasible error

questionFurther information is requestedFurther information is requested

Status: Open.

Task

#125 In draeger-lab/refinegems;

· niinina opened on Jun 4, 2024