Stars
A simple but slick NextJS blogging system for your app, using a GitHub Repo as the CMS
Firefox privacy, security and anti-tracking: a comprehensive user.js template for configuration and hardening
Bootstraps a fresh Ubuntu VPS into a complete multi-agent AI development environment in 30 minutes: coding agents, session management, safety tools, and coordination infrastructure
A curated collection of battle-tested prompts for agentic coding - Browse, copy, and install as Claude Code skills
Fast Rust port of Steve Yegge's beads: local-first, non-invasive issue tracker storing tasks in SQLite with JSONL export for git collaboration
Genomic interval operations on Pandas DataFrames
Git-versioned backup tool for AI coding agent config folders (Claude Code, Cursor, Codex, etc.) with size-based rotation and easy restoration
Spec-driven development (SDD) for AI coding assistants.
You like pytorch? You like micrograd? You love tinygrad! ❤️
Graph-aware TUI for the Beads issue tracker: PageRank, critical path, kanban, dependency DAG visualization, and robot-mode JSON API
Asynchronous coordination layer for AI coding agents: identities, inboxes, searchable threads, and advisory file leases over FastMCP + Git + SQLite
a set of SKILLS.md for doing bioinformatics with agents like claude code
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
Code for the ProteinMPNN paper
Breakthrough Method for Agile Ai Driven Development
🌊 The leading agent orchestration platform for Claude. Deploy intelligent multi-agent swarms, coordinate autonomous workflows, and build conversational AI systems. Features enterprise-grade archite…
methylClass is an R package for methylation-based classification and diagnosis
An open-source application for biological image analysis
QuPath - Open-source bioimage analysis for research
Beads - A memory upgrade for your coding agent
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
Jupyter widget to interactively view molecular structures and trajectories
A comprehensive library for computational molecular biology
Tahoe-x1 is a single cell foundation model designed for gigascale datasets
Methods to compute Local Inverse Simpson's Index (LISI)
InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
TCGA Pathology Reports in Machine Readable Text