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snoBIRD Public
SnoBIRD (BERT-based Identification and Refinement of C/D box snoRNAs) is a Snakemake-based tool which predicts C/D box snoRNA genes (either expressed or pseudogenes) contained in any genomic sequence.
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cd_predictor Public
Pipeline to produce a C/D box snoRNA predictor that is usable across eukaryotes.
Python UpdatedJun 12, 2025 -
sno_genomic_organization Public
Pipeline to get the genomic organization, box type and host gene biotype of snoRNAs across various eukaryotic species.
Python UpdatedMar 18, 2024 -
RPG_pseudogenes_RNA_Seq Public
RNA-Seq pipeline to compute the differential expression between the RNAs bound either by WT ribosomes or ribosomes that contain pseudogene ribosomal proteins.
Python GNU General Public License v3.0 UpdatedJan 23, 2024 -
Pipeline to identify the abundance determinants of human snoRNAs.
Python UpdatedJan 30, 2023 -
TGIRT_Seq_pipeline Public
Snakemake workflow to download the TGIRT-Seq datasets from GEO from multiple species and analyze them using a custom pipeline. Tested with Snakemake v.7.18.2.
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t_thermophila_RNA_Seq Public
Pipeline used to analyze RNA-Seq data from a new La protein pulldown of RNA in Tetrahymena thermophila. Tested with Snakemake v6.0.5.
Python UpdatedMar 28, 2022 -
S_pombe_RNA_Seq Public
Pipeline used to analyze RNA-Seq data from a sla1 pulldown in Schizosaccharomyces pombe under normal conditions or various stresses. Tested with Snakemake v6.0.5.
Python UpdatedMar 25, 2022
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