You may try booster with the following trees inferred from primate nt alignment taken from "The Phylogenetic Handbook".

• Reference tree: ref.nw.gz
• 1000 Bootstrap trees: boot.nw.gz

If you want to also infer reference and bootstrap trees prior to using booster:

• Original alignment: DNA_primates.phy
• Nextflow workflow: primates.nf (nextflow run primates.nf to run it)

To run the example and compute TBE and FBP supports, you may follow the steps above:

gunzip ref.nw.gz
gunzip boot.nw.gz
booster -a tbe -i ref.nw -b boot.nw -i TBE.nw
booster -a fbp -i ref.nw -b boot.nw -i FBP.nw

After computing TBE and FBP using booster, you should obtain trees like the followings:

• TBE supports: TBE.nw
• FBP supports: FBP.nw