Code to generate figures, etc for the Clarke et al sarcoid microbiome paper

Gets the Baltimore ranks (if applicable) from NCBI taxa IDs

Speedy FASTA/FASTQ library and toolkit

A reimplementation of DSK (Rizk et al. 2013) in Rust

k-mer counting in Rust, generalized over all lengths of k

Simple, quick FASTQ to FASTA converter

Qualitative color palette toolkit for R

Data and analysis for the SWGA paper

Minimal Kraken database, for testing

Download refseq genomes for a group using Snakemake

enSemble In-silico aSsembly of PHage Und Similar

Parses GO OBO files, with (limited) reasoning

Conda recipe for DSK 1.6906

Bioconda recipe for IDBA

Introduction to using conda

A modified version of cliquer for use with SWGA

conda recipe for SWGA

Scripts for CLARK to facilitate deployment

Test data for the sunbeam pipeline

Conda package for AMOS

Pipeline for parsing One Codex analyses

Virome of SCID-X1 patients