Column scatter / beeswarm-style plots in ggplot2

An interactive FITS file explorer and organizer

Config files for my GitHub profile.

Fill and color scales for ggplot2, adapted from JRD suggested colors

A hands on forking, cloning, pulling, pushing, merging tutorial.

MARS - MinION Assembly and Reporting System

Illumina Bacterial WGS QC and Assembly Pipeline (companion to MARS)

Sunbeam extension for RGI v5

Select primer sets for selective whole genome amplification (SWGA)

Python utility for converting between config files and argument parsers

Fast, simple line count function in Rust

Modeling diversity attributable to exposure to antibiotics in an LTACH cohort

Hierarchical, autoregressive binomial models for microbiome data

Tools for tidy metagenomics

Sync directory with an S3-compatible endpoint

A method of assessing sequence complexity based on kmer frequencies

the usual, just some dotfiles

Scans a directory of (optionally paired) FASTQ files for the prevalence of particular targets

random R functions

Rules to run ShortBRED using Snakemake

Figures and tables for the SCID-X1 multiomics paper

Source code for eclarke.github.com