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  1. Coverage_Calculation Coverage_Calculation Public

    this script inputs a list of genome coordinates and calculates the average depth and breadth of coverage for each genome coordinate using a samtools mpileup file

  2. vcf_annotation vcf_annotation Public

    Perl

  3. Haplotyper_BestPractices Haplotyper_BestPractices Public

    Running bwa and GATK best practices

    Perl

  4. massSpec_scripts massSpec_scripts Public

    Perl

  5. lesson lesson Public