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Pull requests list

Fixed extra trailing space in an external URL bug Something isn't working fixed - released A verified change that has been released high priority
#928 by matuskalas was merged Nov 12, 2025 Loading… 1.26
1
@matuskalas
2
Added Metaproteomics, fixed Proteomics concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority merge 1st Merge this PR first, before others (except those "Merge anytime"). The typical reason is the IDs!!! polishing Does not extend the content or functionality, but improves other qualities
#926 by matuskalas was merged Nov 7, 2025 Loading… 1.26
@matuskalas
1
Added and edited formats related to MS concept/term addition Request for a new concept(s), or change(s) to existing concept(s) duplicate This issue or pull request already exists polishing Does not extend the content or functionality, but improves other qualities
#924 by rioualen was closed Nov 5, 2025 Loading… 1.26
13
Added concepts Long-read sequencing and Short-read sequencing in topics concept/term addition Request for a new concept(s), or change(s) to existing concept(s) done - staged for release Done, will appear in the next release high priority
#919 by rioualen was merged Oct 29, 2025 Loading… 1.26
@rioualen
8
Added topics miRNA silencing and siRNA experiment concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#918 by rioualen was merged Sep 10, 2025 Loading… 1.26
10
Tabix format issues deprecation Proposal to deprecate (a) concept(s) done - staged for release Done, will appear in the next release help wanted Extra attention is needed merge anytime Merge this PR anytime. It shouldn't interfere with new IDs, and ideally also not with other PRs much polishing Does not extend the content or functionality, but improves other qualities
#915 by rioualen was merged Apr 29, 2025 Loading… 1.26
1
@rioualen
9
Add topics related to HTS techniques concept/term addition Request for a new concept(s), or change(s) to existing concept(s) done - staged for release Done, will appear in the next release
#914 by rioualen was merged Apr 4, 2025 Loading… 1.26
@rioualen
20
Add topics related to HTS techniques duplicate This issue or pull request already exists wont merge This PR will not be merged
#913 by rioualen was closed Apr 2, 2025 • Draft
@rioualen
1
Addition of some file extensions for genomics formats done - staged for release Done, will appear in the next release enhancement New feature or request, other than "concept/term request"
#912 by toniher was merged Mar 31, 2025 Loading… 1.26
@rioualen
3
Added tables for skos matches of EDAM concepts access | publication | release release process, CD, publication, serialisation, etc. fixed - released A verified change that has been released merge anytime Merge this PR anytime. It shouldn't interfere with new IDs, and ideally also not with other PRs much
#910 by adluinf was merged Mar 23, 2025 Loading… 1.26
@adluinf
4
Add tables for matches of EDAM concepts wont merge This PR will not be merged
#909 by adluinf was closed Feb 20, 2025 Loading…
2
Add tables for matches of EDAM concepts wont merge This PR will not be merged
#908 by adluinf was closed Feb 20, 2025 Loading…
2
Sdrf format new PR
#907 by rioualen was merged Feb 3, 2025 Loading…
4
Add attribute subClassOf to concepts Snakemake and Nextflow
#905 by rioualen was merged Jan 3, 2025 Loading…
@rioualen
2
Add Nextflow and Snakemake formats. concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#904 by rioualen was merged Jan 2, 2025 Loading… 1.26
1
@rioualen
3
Added some OWL ontology annotation properties: versionIRI, versionInfo, priorVersion access | publication | release release process, CD, publication, serialisation, etc. enhancement New feature or request, other than "concept/term request" high priority merge anytime Merge this PR anytime. It shouldn't interfere with new IDs, and ideally also not with other PRs much partially fixed More work needed before we can close this polishing Does not extend the content or functionality, but improves other qualities
#899 by matuskalas was merged Sep 20, 2024 Loading… 1.26
1
@matuskalas
2
Merging main into branch
#896 by bianchini88 was merged Sep 16, 2024 Loading…
1
new version upload artifact bug Something isn't working fixed - released A verified change that has been released validation Automated validation, git hooks, CI
#895 by albangaignard was merged Sep 13, 2024 Loading… 1.26
@hmenager @albangaignard
1
Update ci_test.yml bug Something isn't working deprecation Proposal to deprecate (a) concept(s) fixed - released A verified change that has been released validation Automated validation, git hooks, CI
#894 by hmenager was merged Sep 13, 2024 Loading… 1.26
@hmenager
2
Updated templates for concepts (in CONTRIBUTING.md) documentation For now, see https://github.com/edamontology/edamontologydocs instead! fixed - released A verified change that has been released high priority merge anytime Merge this PR anytime. It shouldn't interfere with new IDs, and ideally also not with other PRs much polishing Does not extend the content or functionality, but improves other qualities
#893 by matuskalas was merged Sep 13, 2024 Loading… 1.26
@matuskalas
1
Added FAST5 format - replaces PR #848 and fixes issue #811
#890 by rioualen was closed Sep 13, 2024 Loading…
3
Add QC and MS QC operations broad conceptual issue Discussion around broad-ranging issues, not immediately fully actionable concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority question Further information is requested
#888 by matuskalas was merged Sep 23, 2024 • Draft 1.26
@matuskalas
3
Added software management concepts. Polished data curation, management, etc. concept/term addition Request for a new concept(s), or change(s) to existing concept(s) fixed - released A verified change that has been released merge 1st Merge this PR first, before others (except those "Merge anytime"). The typical reason is the IDs!!! polishing Does not extend the content or functionality, but improves other qualities
#887 by matuskalas was merged Sep 23, 2024 Loading…
3 tasks done
1.26
@matuskalas @bianchini88
3
Removing properties for deprecated class
#886 by bianchini88 was closed Sep 16, 2024 Loading…
2
Replaced tab characters done - staged for release Done, will appear in the next release fixed - released A verified change that has been released manual merge needed PR waiting to be merged merge 2nd Merge this PR as the 2nd (except "merge anytime"). The typical reason is the IDs!! polishing Does not extend the content or functionality, but improves other qualities
#884 by matuskalas was merged Sep 11, 2024 Loading… 1.26
@matuskalas
3
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