Google Chrome and Firefox extension that prevents the blocking of pasting into input fields

RWKV is a RNN with transformer-level LLM performance. It can be directly trained like a GPT (parallelizable). So it's combining the best of RNN and transformer - great performance, fast inference, …

Plain pytorch implementation of LLaMA

Scalable Bloom Filter implemented in Python

Reference-free profiling of polyploid genomes

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

The ARTIC fieldbioinformatics pipeline

Truly parallel gzip decompression

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

Hidden Markov Model based Copy number caller

Wishbone is an algorithm to align cells along developmental trajectories with branches

↙️ ↘️ An R package for working with causal directed acyclic graphs (DAGs)

Long Approximate Matches-based Split Aligner

minimal example implementations for bioinformatics workflow managers

Python package and routines for merging SV VCF files

Fast and frugal disk based k-mer counter

Make PCAWG consensus calls given input VCFs

grep on CUDA

Index and query k-mer matrices in BGZF

A tuning dictionary available to use in FoxDot

RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computati…

The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python

HGVS variant name parsing and generation with SV (structural variant) support

A method to identify structural variation from sequencing data in target regions (Abo et al.)

Dot: An interactive dot plot viewer for comparative genomics

talk to type

Utils for streaming large files (S3, HDFS, gzip, bz2...)

`std::execution`, the proposed C++ framework for asynchronous and parallel programming.

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index