A fast, ergonomic and portable tensor library in Nim with a deep learning focus for CPU, GPU and embedded devices via OpenMP, Cuda and OpenCL backends

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

The HPC toolbox: fused matrix multiplication, convolution, data-parallel strided tensor primitives, OpenMP facilities, SIMD, JIT Assembler, CPU detection, state-of-the-art vectorized BLAS for float…

nim wrapper for htslib for parsing genomics data files

don't get DUP'ed or DEL'ed by your putative SVs.

seqcover allows users to view coverage for hundreds of genes and dozens of samples

useful command-line tools written to showcase hts-nim

simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.

find large indels (in the blind spot between GATK/freebayes and SV callers)

DNA kmer operations for nim

A collection of CSV/TSV Utilities

Fragment-Aware Local Assembly for Short-reads

DO NOT USE inject variants (snps/indels) from a vcf into a bam efficiently.

simple reader and writer for gzipped (and regular) files

nim-lang wrapper for https://github.com/38/d4-format