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ggdark Public
Forked from nsgrantham/ggdarkDark mode for ggplot2 themes
R Other UpdatedOct 10, 2019 -
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minigraph Public
Forked from lh3/minigraphProof-of-concept seq-to-graph mapper and graph generator
C MIT License UpdatedSep 26, 2019 -
biowulf-scripts Public
Scripts I use for analysis on NIH's Biowulf system.
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COSMIC2VCF Public
Convert various TSV files from the Catalogue of Somatic Mutations in Cancer to VCF (esp. structural variants)
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SigProfilerPlotting Public
Forked from AlexandrovLab/SigProfilerPlottingSigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with oth…
Python BSD 2-Clause "Simplified" License UpdatedSep 5, 2019 -
vcfs2maf Public
Forked from chipstewart/vcfs2mafMerge M1 and M2 vcfs into a maflite
Julia UpdatedJul 29, 2019 -
tinyVCF Public
(The beginnings of) A small VCF parser with an emphasis on speed and simplicity.
C++ UpdatedJul 19, 2019 -
pyfaidx Public
Forked from mdshw5/pyfaidxEfficient pythonic random access to fasta subsequences
Python Other UpdatedJul 18, 2019 -
SigMA Public
Forked from parklab/SigMAMutational signature analysis for low statistics SNV data
R Other UpdatedJul 8, 2019 -
musica Public
Forked from marcos-diazg/musicaMuSiCa - Mutational Signatures in Cancer
R MIT License UpdatedJun 13, 2019 -
mutation-signatures Public
Forked from mskcc/mutation-signaturesCreate mutation signatures from MAF's, and decompose them into Stratton signatures
R UpdatedJun 7, 2019 -
python-sortedcontainers Public
Forked from grantjenks/python-sortedcontainersPython Sorted Container Types: Sorted List, Sorted Dict, and Sorted Set
Python Other UpdatedJun 3, 2019 -
pyROV Public
CLI tools for writing ROV data provenance files
Python MIT License UpdatedMay 23, 2019 -
ROV-spec Public
A pROVenance file format for data lineage (and universal computability)
UpdatedMay 23, 2019 -
cloudmarker Public
Forked from cloudmarker/cloudmarkerCloud monitoring tool and framework
Python MIT License UpdatedMay 13, 2019 -
huey Public
Forked from coleifer/hueya little task queue for python
Python MIT License UpdatedMay 12, 2019 -
GLnexus Public
Forked from dnanexus-rnd/GLnexusScalable gVCF merging and joint variant calling for population sequencing projects
C++ Apache License 2.0 UpdatedMay 11, 2019 -
telomerecat Public
Forked from jhrf/telomerecatTelomerecat: The telomere computational analysis tool
Python GNU General Public License v3.0 UpdatedMay 3, 2019 -
english-words Public
Forked from dwyl/english-words📝 A text file containing 479k English words for all your dictionary/word-based projects e.g: auto-completion / autosuggestion
Python The Unlicense UpdatedApr 30, 2019 -
gatk3-germline-snps-indels Public
Forked from gatk-workflows/gatk3-germline-snps-indelsWorkflows for germline short variant discovery with GATK3
WDL BSD 3-Clause "New" or "Revised" License UpdatedApr 22, 2019 -
cgranges Public
Forked from lh3/cgrangesA C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
C MIT License UpdatedApr 20, 2019 -
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ips4o Public
Forked from SaschaWitt/ips4oIn-place Parallel Super Scalar Samplesort (IPS⁴o)
C++ BSD 2-Clause "Simplified" License UpdatedApr 4, 2019 -
telseq Public
Forked from zd1/telseqA software for calculating telomere length
C++ GNU General Public License v3.0 UpdatedApr 2, 2019 -
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bed2vcf Public
Convert a BED file (and a FASTA reference) to *mostly* valid VCF.
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mpakt Public
A small template-based library for binary I/O of C++ primitives and arrays.
C++ UpdatedMar 19, 2019 -
bammer Public
QC methods for checking if two BAM files from the same sample
WDL UpdatedMar 18, 2019 -
SeqLib Public
Forked from walaj/SeqLibC++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ Other UpdatedMar 16, 2019
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