-
succinct Public
Forked from miiohio/succinctSuccinct, compact, and compressed data structures for data-intensive applications
Python MIT License UpdatedJul 11, 2020 -
fermi-lite Public
Forked from lh3/fermi-liteStandalone C library for assembling Illumina short reads in small regions
-
-
bazam Public
Forked from ssadedin/bazamA read extraction and realignment tool for next generation sequencing data
Groovy GNU Lesser General Public License v2.1 UpdatedJun 6, 2020 -
discohash Public
Forked from DO-SAY-GO/DISCoHAsH👯 Discohash - A super fast and simple hash. 5GB/s serial (depending on hardware).
-
AlignGraph2 Public
Forked from Godotcoffee/AlignGraph2Similar genome assisted reassembly pipeline for PacBio long reads
C++ UpdatedMay 25, 2020 -
-
template-python Public
Forked from jacebrowning/template-pythonA template for new Python libraries.
Python Do What The F*ck You Want To Public License UpdatedApr 24, 2020 -
cluster-svs Public
A wrapper around the PCAWG sv clustering scripts for per-project files.
R GNU Affero General Public License v3.0 UpdatedApr 23, 2020 -
tinyGFA Public
A header-only GFA file indexer (think .fai for GFA files)
-
bh20-workflows-bhxiv Public
Forked from heuermh/bh20-workflows-bhxivWorkflows topic group BioHackathon 2020 mini-publication for https://BioHackrXiv.org
Common Workflow Language Creative Commons Zero v1.0 Universal UpdatedApr 11, 2020 -
covid-gene-expression Public
Forked from avantikalal/covid-gene-expressionHackathon team: gene expression analysis for Covid-19
R MIT License UpdatedApr 11, 2020 -
SimpleGPUHashTable Public
Forked from nosferalatu/SimpleGPUHashTableA simple GPU hash table implemented in CUDA using lock free techniques
Cuda The Unlicense UpdatedApr 9, 2020 -
rkmh Public
Classify sequencing reads using MinHash.
-
mkat-bwa-0.6.2 Public
A (patched, ancient) BWA version for meerkat
C GNU General Public License v3.0 UpdatedMar 8, 2020 -
-
-
mkat-bamreader Public
Fork of bamreader (from Meerkat) which actually compiles.
C++ UpdatedMar 5, 2020 -
mkat-mybamtools Public
A modified version of the mybamtools library that actually compiles.
C++ MIT License UpdatedMar 5, 2020 -
dsub Public
Forked from DataBiosphere/dsubOpen-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
Python Apache License 2.0 UpdatedMar 5, 2020 -
SigProfilerMatrixGenerator Public
Forked from AlexandrovLab/SigProfilerMatrixGeneratorSigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED fil…
Python BSD 2-Clause "Simplified" License UpdatedFeb 20, 2020 -
-
SigProfilerExtractor Public
Forked from AlexandrovLab/SigProfilerExtractorSigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities i…
Python BSD 2-Clause "Simplified" License UpdatedFeb 11, 2020 -
iitii Public
Forked from mlin/iitiiImplicit Interval Tree with Interpolation Index
Jupyter Notebook Apache License 2.0 UpdatedFeb 8, 2020 -
ntJoin Public
Forked from bcgsc/ntJoin🔗Genome assembly scaffolder using minimizer graphs
-
svaha2 Public
Linear-time, low-memory construction of variation graphs
-
TheTools Public
Forked from awesome-genomegraph-tools/TheToolsA semi-curated list of genomegraph tools!
MIT License UpdatedJan 30, 2020 -
-
sketch Public
Forked from dnbaker/sketchC++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
C++ MIT License UpdatedNov 8, 2019 -
BitArray Public
Forked from noporpoise/BitArrayC bit array structs and methods
C Creative Commons Zero v1.0 Universal UpdatedOct 21, 2019
{{ message }}