tools for working with genome variation graphs

Sequence-to-graph mapper and graph generator

Tools for manipulating sequence graphs in the GFA and rGFA formats

De novo genome assembly and multisample variant calling

Modular Multi-scale Integrated Genome Graph Browser

Genome inference from a population reference graph

A modern genomics framework for julia

visual analysis of your VCF files

Toolkit for VNTR genotyping and repeat-pan genome graph construction

Linear-time, low-memory construction of variation graphs

Methylation analysis pipeline for genome graph

Sparse Binary Relation Representations for Genome Graph Annotation

Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly

Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.

This is experiment to measure performance in vg recalibrate, testing different models.

Locate k-mers in variation graphs using GCSA2

A tool for modelling graphs of genetic variation.