biology

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

The main repository for the development of the evolution game Thrive.

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

A library of free open source icons for science illustrations in biology and chemistry

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

Scripts to download genomes from the NCBI FTP servers

Foundation Models for Genomics & Transcriptomics

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

A small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.

3d engine implementation in DNA code!

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Java utilities for Bioinformatics

Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

🔬A library of JavaScript components to represent biological data

A general, evolvable, and distributed agent framework & harness for data science.

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

Library for Digital Pathology Image Processing