⚡ ♒ Rapid prokaryotic genome annotation
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Jan 6, 2026 - Perl
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genome-annotation
Here are 243 public repositories matching this topic...
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
mag bioinformatics annotation genome-annotation microbial-genomics bacteria plasmids bacterial-genomes metagenome-assembled-genomes
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Oct 11, 2026 - Python
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
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Jul 16, 2026 - JavaScript
Extensive de-novo TE Annotator
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Sep 10, 2026 - Perl
Eukaryotic Genome Annotation Pipeline
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Oct 12, 2026 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics snps medicine genomics genome cancer biology vcf ensembl medical cancer-genomics genome-annotation proteomics gtf bed cancer-genomes genome-sequencing genome-browser genomes csv-parser
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Oct 7, 2025 - Python
Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.
formatting metagenomics genome-annotation workflows sequence-assembly antimicrobial-resistance-prediction functional-regulatory-and-non-coding-rna sequence-sites-features-and-motifs trna-gene-prediction
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Sep 17, 2026 - Python
Earl Grey: A fully automated TE curation and annotation pipeline
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Sep 15, 2026 - Python
Genomic Data Retrieval with R
r genomics genome metagenomics rstats genome-annotation r-package meta-analysis genome-retrieval biomart database-retrieval ncbi-genbank ensembl-servers sequenced-genomes proteome peer-reviewed
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Dec 2, 2025 - R
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
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Jun 30, 2026 - Perl
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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Nov 23, 2025 - Python
High-precision TE Annotator
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Dec 4, 2025 - Python
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
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Oct 11, 2026 - HTML
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
python bioinformatics server genomics health variants global rna genome-annotation ga4gh reference-implementation alliance
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Jan 24, 2018 - Python
convert various features into a GFF-like file for use in genome browsers
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Jun 17, 2026 - Python
Discover and annotate the virome
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Jun 10, 2026 - Python
A fully automated gene annotator from RNA-Seq expression data
bioinformatics rna-seq finder bioinformatics-pipeline genome-annotation protein-sequences gtf gene-models transcripts gene-annotations changepoint-detection predict-genes gene-annotation-pipeline
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Jul 1, 2023 - Python
A parallel wrapper for LTR_FINDER
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Mar 8, 2026 - Perl
This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
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Apr 1, 2025
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