-
-
BRASS Public
Forked from cancerit/BRASSBreakpoints via assembly - Identifies breaks and attempts to assemble rearrangements.
Perl GNU Affero General Public License v3.0 UpdatedJul 25, 2018 -
sv-pipeline Public
Forked from hall-lab/sv-pipelinePipeline for structural variation detection in cohorts
WDL UpdatedJul 24, 2018 -
cpp-taskflow Public
Forked from taskflow/taskflowFast C++ Parallel Programming with Task Dependencies
C++ MIT License UpdatedJul 24, 2018 -
building variation graphs from hgsvc data
Shell UpdatedJul 20, 2018 -
PicoSHA2 Public
Forked from okdshin/PicoSHA2a header-file-only, SHA256 hash generator in C++
C++ MIT License UpdatedJul 19, 2018 -
bindash Public
Forked from zhaoxiaofei/bindashFast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
C++ Other UpdatedJul 18, 2018 -
ntHash Public
Forked from bcgsc/ntHashntHash: recursive nucleotide hashing
C++ MIT License UpdatedJun 16, 2018 -
fastahack Public
Forked from ekg/fastahackutilities for indexing and sequence extraction from FASTA files
C++ MIT License UpdatedJun 5, 2018 -
py-upset Public
Forked from ImSoErgodic/py-upsetA pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
Python UpdatedJun 4, 2018 -
wdl-pcawg-sanger-cgp-workflow Public
Forked from ICGC-TCGA-PanCancer/wdl-pcawg-sanger-cgp-workflowWDL implementation of https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker
Perl GNU Affero General Public License v3.0 UpdatedMay 11, 2018 -
pystream-protobuf Public
Forked from cartoonist/pystream-protobufPython implementation of stream library for streaming google protocol buffer objects
Python MIT License UpdatedMay 6, 2018 -
homebrew-bio Public
Forked from brewsci/homebrew-bio🍺🔬 Bioinformatics formulae for the Homebrew and Linuxbrew package managers
Ruby Other UpdatedMay 2, 2018 -
-
cbitset Public
Forked from lemire/cbitsetA simple bitset library in C
C Apache License 2.0 UpdatedApr 17, 2018 -
rkmh_sim_data Public
Example simulated data for rkmh (viral coinfection analysis using a MinHash toolkit)
UpdatedApr 12, 2018 -
kseq_reader Public
A threadsafe + buffered fastq/fasta reading wrapper, based on kseq.h from Heng Li
-
Shimmer Public
Forked from nhansen/ShimmerShimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.
Perl UpdatedMar 6, 2018 -
vcflib Public
Forked from vcflib/vcfliba simple C++ library for parsing and manipulating VCF files, + many command-line utilities
C++ MIT License UpdatedMar 5, 2018 -
fe Public
A python script/minimal GUI app for aggregating variant annotations and predicting impacts
Python UpdatedFeb 28, 2018 -
canu Public
Forked from marbl/canuA single molecule sequence assembler for genomes large and small.
C++ UpdatedFeb 27, 2018 -
tools for working with variation graphs
C++ Other UpdatedFeb 27, 2018 -
GFA-spec Public
Forked from GFA-spec/GFA-specGraphical Fragment Assembly (GFA) Format Specification
Makefile UpdatedFeb 23, 2018 -
ggsv Public
Simulation scripts and other items for comparing SV callers
-
klib Public
Forked from attractivechaos/klibA standalone and lightweight C library
C UpdatedFeb 3, 2018 -
JaBbA Public
Forked from mskilab-org/JaBbAMIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
R UpdatedJan 26, 2018 -
bsort Public
Forked from pelotoncycle/bsortExtremely fast inplace radix sort
C Other UpdatedJan 9, 2018 -
-
digestpp Public
Forked from kerukuro/digestppC++11 header-only message digest library
C++ UpdatedNov 9, 2017 -
lumpy-sv Public
Forked from arq5x/lumpy-svlumpy: a general probabilistic framework for structural variant discovery
C MIT License UpdatedOct 30, 2017
{{ message }}