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maftools Public
Forked from PoisonAlien/maftools♋ Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
R Other UpdatedOct 24, 2017 -
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freebayes Public
Forked from freebayes/freebayesBayesian haplotype-based genetic polymorphism discovery and genotyping.
C++ MIT License UpdatedSep 4, 2017 -
de novo sequence assembler using string graphs
C++ UpdatedJul 21, 2017 -
vg_d Public
A docker file for vg (github.com/vgteam/vg), linked to an automatic build on Dockerhub.
MIT License UpdatedJun 23, 2017 -
hgvm-builder Public
Forked from BD2KGenomics/hgvm-builderTool to build a (Human) Genome Variation Map from a set of data sources
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delly Public
Forked from dellytools/dellyDELLY2: Structural variant discovery by integrated paired-end and split-read analysis
C++ GNU General Public License v3.0 UpdatedMay 11, 2017 -
tool_gistic2_wgs Public
Forked from gaog94/tool_gistic2_wgsSet up GISTIC2 workflow (no marker file required)
WDL UpdatedMay 4, 2017 -
wham Public
Forked from zeeev/whamStructural variant detection and association testing
C++ Other UpdatedApr 27, 2017 -
wordset-dictionary Public
Forked from wordset/wordset-dictionaryThe Open Source Dictionary
Other UpdatedApr 9, 2017 -
zstr Public
Forked from mateidavid/zstrA C++ header-only ZLib wrapper
C++ MIT License UpdatedMar 31, 2017 -
suave Public
Forked from dellytools/suavesuave: structural variant explorer
JavaScript UpdatedDec 23, 2016 -
single_file_libs Public
Forked from r-lyeh/single_file_libsList of single-file C/C++ libraries.
UpdatedNov 25, 2016 -
EMu Public
Forked from andrej-fischer/EMuAn Expectation-Maximization algorithm to infer mutational signatures
C++ GNU General Public License v3.0 UpdatedNov 16, 2016 -
rnaseq_tutorial_v1 Public
Forked from griffithlab/rnaseq_tutorial_v1Archive of original RNAseq.wiki tutorial that accompanied PLoS Comp Bio paper
R Other UpdatedNov 13, 2016 -
bio_docker Public
Dockerfiles for several SV callers and other miscellaneous bio apps.
UpdatedNov 1, 2016 -
pbh5tools Public
Forked from zkennedy/pbh5toolsA swiss-army knife for interrogating PacBio® HDF5 files (cmp.h5, bas.h5)
Python UpdatedSep 22, 2016 -
cgpbox Public
Forked from cancerit/cgpboxCore calling tools in a convenient docker image
JavaScript GNU Affero General Public License v3.0 UpdatedAug 18, 2016 -
hpv_minION_analysis Public
Contains scripts used to analyze HPV samples sequenced on ONT minIONs.
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HPV_PanGenome Public
Files and scripts for generating a pan-genome reference graph for learning models.
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submission_scripts Public
A bunch of helper scripts to make sense of the ludicrous LSF submission line.
Shell UpdatedJun 6, 2016 -
Mash Public
Forked from marbl/MashFast genome and metagenome distance estimation using MinHash
C++ Other UpdatedJun 2, 2016 -
vg_pill Public
Contains source code for vg dependencies that are often installed via a package manager.
Makefile UpdatedMay 10, 2016 -
bedtools Public
Forked from arq5x/bedtoolsA powerful toolset for genome arithmetic.
C++ GNU General Public License v2.0 UpdatedMar 30, 2016 -
vg_learn Public
Datasets and scripts and general things for building machine learning tools with VG.
UpdatedMar 1, 2016 -
libcluster Public
Forked from dsteinberg/libclusterAn extensible C++ library of Hierarchical Bayesian clustering algorithms, such as Bayesian Gaussian mixture models, variational Dirichlet processes, Gaussian latent Dirichlet allocation and more.
C++ GNU Lesser General Public License v3.0 UpdatedFeb 26, 2016 -
protocol-buffers-stream Public
Forked from mafintosh/protocol-buffers-streamStreaming protocol buffers for Node.js
JavaScript MIT License UpdatedFeb 6, 2016 -
xg Public
Forked from vgteam/xg-oldsuccinct labeled graphs with collections and paths
C++ MIT License UpdatedDec 21, 2015
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