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An extensible, state-of-the-art framework for columnar compression, and the fastest FOSS columnar file format. Formerly at @spiraldb, now an Incubation Stage project at LFAI&Data, part of the Linux…
fastVEP: High-performance Variant Effect Predictor in Rust
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
An extremely fast Python package and project manager, written in Rust.
v2.x of the microassembly based somatic variant caller
Porting of Protein Activity and Pathway Inference to single cell and Python.
Blazing-Fast Bioinformatic Operations on Python DataFrames
Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologi…
Precision HLA typing from next-generation sequencing data
Short-read and long-read sequencing tools for diagnostics
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
Open Source alternative to Algolia + Pinecone and an Easier-to-Use alternative to ElasticSearch ⚡ 🔍 ✨ Fast, typo tolerant, in-memory fuzzy Search Engine for building delightful search experiences
An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
GitHub Action to push a subdirectory as a branch to any git repo (e.g. for GitHub Pages)
Efficient and versatile C++ software program for eQTL analysis
Rust/Wasm-powered SQL transpiler for more than 30 SQL dialects
Pipeline to fetch metadata and raw FastQ files from public databases
Interactive roadmaps, guides and other educational content to help developers grow in their careers.
The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.
A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Create static executable from dynamic executable
CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
Open-source orchestration for zero-human companies
Spatial omics analysis and visualization library
Presentation-Ready Data Summary and Analytic Result Tables
tidyverse and ggplot2 methods for terra spatial objects