PaperBanana: Automating Academic Illustration For AI Scientists

Research code accompanying AlphaGenome

A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

R Package for 2D and 3D mapping and data visualization

GPT RStudio addins that enable GPT assisted coding, writing & analysis

python implementation of the diceplot package

R package for visualising high-dimensional categorical data. Fully ggplot compatible implementation for the diceplot plotting library

Learn single-cell dynamics using neural differential equations

Survival Analysis and Visualization

A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

Pyranges: a Python framework for ultrafast sequence interval operations

A list of awesome Linear resources, add-ons, integrations, links, etc.

This is the software for FAst Marginal Epistasis test (FAME)

"Paper2Slides: From Paper to Presentation in One Click"

Conveniently process a dictionary of anndatas

'ggplot2' Based Publication Ready Plots

R package for quality control of plink genetic datasets

R package for thematic maps

PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Scalable framework for integrating single-cell omics with genetic data using AnnData.