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1. czbiohub-sf/iohub czbiohub-sf/iohub Public

   Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

   Python 40 10

2. czbiohub-sf/coPylot czbiohub-sf/coPylot Public

   coPylot - microscope control

   Python 8 11

3. mehta-lab/VisCy mehta-lab/VisCy Public

   computer vision models for single-cell phenotyping

   Python 72 11

4. SaraLab-Group/M25_Acqusition_Engine SaraLab-Group/M25_Acqusition_Engine Public

   C++ 1

5. royerlab/ultrack royerlab/ultrack Public

   Cell tracking and segmentation software

   Python 147 20

6. mehta-lab/waveorder mehta-lab/waveorder Public

   Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.

   Python 34 7