Elkins Lab
- 2 followers
- United States of America
- https://github.com/elkins-lab
- george.f.elkins@gmail.com
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diff-biophys
diff-biophys PublicDifferentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
Python 1
Repositories
- bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
elkins-lab/bioconda-recipes’s past year of commit activity - diff-biophys Public
Differentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
elkins-lab/diff-biophys’s past year of commit activity - synth-saxs Public
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
elkins-lab/synth-saxs’s past year of commit activity - torsion-tuner Public
GNN-based protein structure refinement using JAX-differentiable kinematics to fit solution-state experimental data (SAXS/NMR).
elkins-lab/torsion-tuner’s past year of commit activity - diff-ensemble Public
Differentiable VAE framework for predicting protein structural ensembles (IDPs) consistent with SAXS and NMR data. Built on JAX/Flax.
elkins-lab/diff-ensemble’s past year of commit activity - synth-cryo-em Public
Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
elkins-lab/synth-cryo-em’s past year of commit activity - synth-afm Public
Differentiable High-Speed AFM (HS-AFM) simulation for protein structures. JAX-powered toolkit for generating synthetic movies with realistic tip-dilation and scanning lag.
elkins-lab/synth-afm’s past year of commit activity - open-bcif Public
High-performance, streaming-first toolkit for manipulating and validating BinaryCIF (BCIF) files at scale. Designed for structural biology.
elkins-lab/open-bcif’s past year of commit activity - synth-dynamics Public
Fast Langevin dynamics engine using the Anisotropic Network Model (ANM) for rapid protein conformational ensemble generation.
elkins-lab/synth-dynamics’s past year of commit activity - resonance-flow Public
JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.
elkins-lab/resonance-flow’s past year of commit activity
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