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1. novonordisk-research/BEE-BO novonordisk-research/BEE-BO Public

   Batched Energy-Entropy acquisition for Bayesian Optimization (NeurIPS 2024)

   Python 10 1

2. signalp-6.0 signalp-6.0 Public

   Multi-class signal peptide prediction and structure decoding model.

   Python 102 17

3. graph-part/graph-part graph-part/graph-part Public

   GraphPart, a data partitioning method for ML on biological sequences

   Jupyter Notebook 32 6

4. frederikkemarin/BEND frederikkemarin/BEND Public

   Benchmarking DNA Language Models on Biologically Meaningful Tasks

   Python 127 20

5. alphafold-peptide-receptors alphafold-peptide-receptors Public

   Identifying peptide-receptor interactions using AlphaFold-Multimer

   Jupyter Notebook 27 7

6. SecretoGen SecretoGen Public

   A conditional generative model for signal peptide design and efficiency prediction

   Python 11 3