Biomni: a general-purpose biomedical AI agent

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Kokoro TTS for iOS and macOSX

Early feature extraction determines performance: systematic evaluation of deep learning models for high-resolution chromatin accessibility prediction

Interactive visualizations of the geometric intuition behind diffusion models.

Isoform-level spatial transcriptomics analysis

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

Lightweight coding agent that runs in your terminal

An open protocol enabling communication and interoperability between opaque agentic applications.

Collection of apple-native tools for the model context protocol.

Model Context Protocol Servers

Integrate the DeepSeek API into popular softwares

Arc Virtual Cell Atlas

LLM agents for working with the SRA and associated bioinformatics databases.

Supervised Independent Subspace Principal Component Analysis

A simple pip-installable Python tool to generate your own HTML citation world map from your Google Scholar ID.

ChatMol

Training Large Language Model to Reason in a Continuous Latent Space

inferring regulatory cellular dynamics

scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

Universal Single-Cell Genomics Preprocessing package

Template repository for analysis of single-cell data and tools.

A visualization grammar and GPU-accelerated toolkit for genomic data