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SQANTI3 Public
Forked from ConesaLab/SQANTI3Tool for the Quality Control of Long-Read Defined Transcriptomes
HTML GNU General Public License v3.0 UpdatedOct 8, 2025 -
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catalan_conjugation_deck Public
Make a conjugation deck for Catalan
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250218_longtrec_swan Public
Resources for running Swan tutorial for LongTrec meeting
Jupyter Notebook UpdatedFeb 27, 2025 -
paper_rnawg Public
Data processing scripts and figure recreation for the ENCODE4 RNA paper
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pyranges Public
Forked from pyranges/pyrangesPerformant Pythonic GenomicRanges
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2021_c2c12 Public
Code used to generate the figures for our 2021 manuscript on LR-Split-seq.
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LR-splitpipe Public
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
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lapa Public
Forked from mortazavilab/lapaAlternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Jupyter Notebook UpdatedAug 25, 2023 -
lab_pipelines Public
Pipelines for analyzing data for different protocols in the Mortazavi lab
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tama Public
Forked from GenomeRIK/tamaTranscriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
Python GNU General Public License v3.0 UpdatedMay 2, 2023 -
seaborn Public
Forked from mwaskom/seabornStatistical data visualization in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 13, 2022 -
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python-ternary Public
Forked from marcharper/python-ternary🔺 Ternary plotting library for python with matplotlib
Python MIT License UpdatedAug 24, 2022 -
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scisorseqr Public
Forked from noush-joglekar/scisorseqrscisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
R MIT License UpdatedJul 8, 2022 -
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