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Workshop preparation notes

These are the instructions to install required tool to get you ready for the RSECon24 workshop: Effortlessly creating Python packages with good practices

Session details

14:30-15:45 Tuesday, 3 September, 2024, 2.16 (Classroom)

Submission details

Calendarlink

Computer

Participants must work on a computer with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) on which they have administrative privileges.

Software

To participate in this workshop, you will need to prepare the following (if you haven't already):

  • Install Shell and Git. Please refer to this page for installation instructions.
  • Create a GitHub account. Please refer to this page for instructions.
  • Set up an SSH connection to GitHub. Please refer to this page for instructions.
  • Install Miniconda. Please refer to this page for instructions.
  • Create a Conda environment for the workshop. Please refer to this page for instructions.

To confirm that everything works

You should now be able to open a terminal window and execute the following commands:

Git

git --version

returning (something similar to):

git version 2.37.1 (Apple Git-137.1)

Github account & SSH connection

ssh git@github.com

returning (something similar to):

Hi [username]! You've successfully authenticated, but GitHub does not provide shell access.
Connection to github.com closed.

Conda

conda --version

returning (something similar to):

conda 22.9.0

Conda environment for the workshop

conda activate coderefinery
python -c "import sys; assert sys.version_info.major>=3"
jupyter-lab --version
pytest --version
sphinx-build --version
snakemake --version
conda deactivate

returning (something similar to):

3.9.10
pytest 7.0.1
sphinx-build 4.4.0
7.1.1

Thanks to eScience Center Training Team for their help on these instructions.

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